Hans J. Skaug
Publications
Academic articles
2020
Experimental design for parameter estimation in steady-state linear models of metabolic networks
Mathematical Biosciences
319
2020
A comparison of Monte Carlo sampling methods for metabolic network models
PLOS ONE
15:e0235393
p. 1-24
2019
Drivers of the summer-distribution of Northeast Atlantic mackerel (Scomber scombrus) in the Nordic Seas from 2011 to 2017; a Bayesian hierarchical modelling approach.
ICES Journal of Marine Science
76
p. 530-548
2019
Contaminant accumulation and biological responses in Atlantic cod (Gadus morhua) caged at a capped waste disposal site in Kollevåg, Western Norway
Marine Environmental Research
145
p. 39-51
2019
Validation of close‐kin mark–recapture (CKMR) methods for estimating population abundance
Methods in Ecology and Evolution
10
p. 1445-1453
2019
Efficient Computation of Hessian Matrices in TensorFlow
arXiv.org
2017
On the application of improved symplectic integrators in Hamiltonian Monte Carlo
Communications in Statistics - Simulation and Computation
47
p. 500-509
2017
Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species
BMC Genomics
18:76
p. 1-11
2017
The parent-offspring probability when sampling age-structured populations
Theoretical Population Biology
118
p. 20-26
2017
glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling
The R Journal
9
p. 378-400
2016
Close-kin mark-recapture
Statistical Science
31
p. 259-274
2016
TMB: Automatic differentiation and laplace approximation
Journal of Statistical Software
70
p. 1-21
2016
Trade-offs between accuracy and interpretability in von Bertalanffy random-effects models of growth
Ecological Applications
26
p. 1535-1552
2015
Data assimilation by use of the iterative ensemble smoother for 2D facies models
SPE Journal
20
p. 169-185
2015
Fitting state-space models to seal populations with scarce data
ICES Journal of Marine Science
72
p. 1462-1469
2015
Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes
ICES Journal of Marine Science
72
p. 1297-1310
2015
The importance of spatial models for estimating the strength of density dependence
Ecology
96
p. 1202-1212
2015
Bandwidth selection in pre-smoothed particle filters
Statistics and computing
Published ahead of print
2015
Spatial factor analysis: A new tool for estimating joint species distributions and correlations in species range
Methods in Ecology and Evolution
6
p. 627-637
2015
Distance sampling with a random scale detection function
Environmental and Ecological Statistics
22
p. 725-737
2014
Estimation of production rates with transient well-flow modeling and the auxiliary particle filter
SPE Journal
19
p. 172-180
2014
Next-generation sequencing for molecular ecology: a caveat regarding pooled samples
Molecular Ecology
23
p. 502-512
2014
A flexible and automated likelihood based framework for inference in stochastic volatility models
76
p. 642-654
2014
Maximum likelihood estimation of partially observed diffusion models
Journal of Econometrics
180
p. 73-80
2014
Determining individual variation in growth and its implication for life-history and population processes using the Empirical Bayes Method
PLoS Computational Biology
10
2014
Investigating population genetic structure in a highly mobile marine organism: The minke whale balaenoptera acutorostrata acutorostrata in the north east atlantic
PLOS ONE
9
2013
Estimating genotyping error rates from parent-offspring dyads
Statistics and Probability Letters
83
p. 812-819
2013
Hybrids between common and Antarctic minke whales are fertile and can back-cross
BMC Genetics
14
2013
Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS
Methods in Ecology and Evolution
4
p. 501-512
2013
Markov-modulated nonhomogeneous poisson processes for modeling detections in surveys of marine mammal abundance
Journal of the American Statistical Association
108
p. 840-851
2012
Comparing the adaptive Gaussian mixture filter with the ensemble Kalman filter on synthetic reservoir models
Computational Geosciences
16
p. 467-482
2012
The Norwegian minke whale DNA register: a data base monitoring commercial harvest and trade of whale products
Fish and Fisheries
13
p. 313-332
2012
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
Optimization Methods and Software
27
p. 233-249
2012
Abundance estimation of long-diving animals using line transect methods
Biometrics
68
p. 504-513
2012
Good ethics or political and cultural censoring in science?
ICES Journal of Marine Science
69
p. 493-497
2012
Filtering with state space localized Kalman gain
Physica D : Non-linear phenomena
241
p. 1123-1135
2012
Fitting general stochastic volatility models using Laplace accelerated sequential importance sampling
56
p. 3105-3119
2011
Bridging the ensemble Kalman filter and particle filters: the adaptive Gaussian mixture filter
Computational Geosciences
15
p. 293-305
2011
Quantifying Monte Carlo Uncertainty in the Ensemble Kalman Filter
SPE Journal
16
p. 172-182
2011
Genotyping errors in a calibrated DNA register: implications for identification of individuals
BMC Genetics
12
2010
A method for defining management units based on genetically determined close relatives
ICES Journal of Marine Science
67
p. 551-558
2010
Estimating genetic architectures from artificial-selection responses: A random-effect framework
Theoretical Population Biology
77
p. 119-130
2010
Global occurrence trajectories of microfossils: environmental volatility and the rise and fall of individual species
Paleobiology
36
p. 224-252
2010
Detecting dyads of related individuals in large collections of DNA-profiles by controlling the false discovery rate
Molecular Ecology Resources
10
p. 693-700
2010
Migration of Antarctic Minke Whales to the Arctic
PLOS ONE
5
2010
Asymptotic bias of the hazard probability model under model mis-specification
Journal of Cetacean Research and Management
11
p. 249-252
2008
Genetic analyses reveal promiscuous mating in female minke whales, Balaenoptera acutorostrata
Journal of Cetacean Research and Management
9
p. 249-251
2008
Fitting mixed-effects models when data are left truncated
43
p. 121-133
2008
Building and Fitting Non-Gaussian Latent Variable Models via the Moment-Generating Function
Scandinavian Journal of Statistics
35
p. 664-676
2007
Historical population assessment of Barents Sea harp sea's (Pagophilus groenlandicus)
ICES Journal of Marine Science
64
p. 1356-1365
2006
An integrated-likelihood method for estimating genetic differentiation between populations
Genetics
173
p. 2073-2082
2006
Automatic Approximation of the Marginal Likelihood in non-Gaussian Hierarchical Models
51
p. 699-709
2006
DNA registers of legally obtained wildlife and derived products as means to identify illegal takes
Conservation Biology
4
p. 1284-1293
2006
Markov modulated Poisson processes for clustered line transect data
Environmental and Ecological Statistics
13
p. 199-211
2005
Genetic tagging of male North Atlantic minke whales through comparison of maternal and foetal DNA-profiles
Journal of Cetacean Research and Management
7
p. 113-117
2005
Disentangling the effects of capture efficiency and population abundance on catch data using random effects models
ICES Journal of Marine Science
62
p. 1543-1555
2005
Genetic tagging of males in North Atlantic minke whales through comparison of mother and fetus DNA-profiles
Journal of Cetacean Research and Management
7
p. 113-117
2004
Abundance of minke whales (Balaenoptera acutorostrata) in the Northeastern Atlantic
Canadian Journal of Fisheries and Aquatic Sciences
61
p. 870-886
2002
Automatic differentiation to facilitate maximum likelihood estimation in nonlinear random effects models
Journal of Computational And Graphical Statistics
p. 458-470
2001
Allele-sharing methods for estimation of population size
Biometrics
55
p. 750-756
1999
Hazard models for line transect surveys with independent observers
Biometrics
55
p. 29-36
1999
Simulated likelihood methods for complex double-platform line transect surveys
Biometrics
55
p. 678-687
1997
Abundance of northeastern Atlantic minke whales, estimates for 1989 and 1995
Rep. int. Whal. Commn
47
p. 453-483
1997
Do Minke Whales (Balaenoptera acutorostrara) Exhibit Particular Prey Preferences?
Journal of Northwest Atlantic Fishery Science
22
p. 91-104
1996
Diet and food avaliability for Northeastern Atlantic minke whales, Balaenoptera Acutorostrata
Reports of the International Whaling Commission
46
p. 371-382
1993
A nonparametric test of serial independence based on the empirical distribution function
Biometrika
80
p. 591-602
Posters
2019
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR
2019
Bayesian flux balance analysis of metabolic pathways
2018
Experimental design for estimation of first order kinetic parameters in steady-state metabolic networks
2018
Mathematical methods for detection and localization of CO2 leaks
2018
Model Reduction for Tracer Transport and Applications
2017
Assessment of machine learning methods as a tool in detecting leakages
2017
Bayes’ theorem as the fundament to design monitoring programs.
2017
Assessment of Topological Data Analysis and Machine Learning Technologies as Tools for Seep Detection
2017
Mathematical modeling of regulatory interactions in the fatty acid synthesis pathway
2017
Structural identifiability of kinetic parameters
2017
Mathematical modeling of regulatory interactions in the fatty acid synthesis pathway
2017
Mathematical modeling of regulatory interactions in the fatty acid synthesis pathway
2017
dCod 1.0 decoding the systems toxicology of Atlantic cod
2017
dCod 1.0: decoding the systems toxicology of Atlantic cod (Gadus morhua)
2016
Bayes’ theorem as the fundament to design monitoring programs.
Chapters and books
2010
Maximum Simulated Likelihood Methods and Applications
2010
Simulated maximum likelihood estimation of continuous time stochastic volatility models
p. 137-161
Popular science articles
2015
DNA-register for vågehval: en skattekiste for studier av hvalbiologi.
Fisken og Havet, Særnummer
1-2015
p. 108-109
2010
Hva kan et register over vågehvalens DNA fortelle om adferd og biologi?
Ottar
280
p. 10-15
1996
Abundance of northeastern Atlantic minke whales, estimates for 1989 and 1995
Ukjent
1996
Perpendicular distance line transect methods based on integrated spatial hazard probability models
Ukjent
1996
NAILS-96, System Design and Program Documentation
Ukjent
Academic lectures
2019
Integration by differentiation; almost a free lunch
2019
Close-Kin Mark-Recapture (CKMR)
2019
Close kin mark recapture in fisheries
2019
Close-Kin Mark-Recapture (CKMR)
2019
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR
2018
Ecotoxicological responses in Atlantic cod (Gadus morhua) after caging at a capped waste disposal site in Kollevåg, Western Norway
2018
Ecotoxicological responses in Atlantic cod (Gadus morhua) after caging at a capped waste disposal site in Kollevåg, Western Norway
2018
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA)
2018
Bayesian flux balance analysis; concepts and computation
2018
Combining Models and Machine Learning Techniques to Design Leak Detection Monitoring
2018
Machine Learning in CO2 leak detection
2017
Structural identifiability of kinetic parameters
2017
TMB: a flexible framework for developing mixed model software in R
2017
PRECISION-CUT LIVER SLICES (PCLS) FOR TOXICOGENOMIC STUDIES IN ATLANTIC COD (Gadus morhua): THE dCOD 1.0 PROJECT
2015
Panel data model with mixed frequency – an application to producers' pricing behaviour
2015
Measurement error model for the Norwegian minke whale surveys 2008-2013
2015
Abundance estimates of common minke whales in the Northeast Atlantic base don survey data collected over the period 2008-2013
2014
Preliminary abundance estimates of common minke whales in the Northeast Atlantic based on survey data collected over the period 2008-2013
2014
Bandwidth Selection In Pre-Smoothed Particle Filters
2012
Numerical comparison of Ensemble Kalman Filter and Randomized maximum Likelihood
2012
Data Assimilation Using the Iterative Ensemble Smoother for 2-D Categorical Models
2008
Estimating distributions of correlated individual life-history traits from mark-recapture data
1996
NAILS-96 Specification document
1994
Ikkeparametriske tester for seriell uavhengighet
1994
Nonparametric tests of serial indepence
Annet tidsskriftbidrag
2019
Editorial
Scandinavian Journal of Statistics
46
p. 1-1
2014
Unødvendig med fem fangstområder for vågehval.
Forskning.no
Reports and papers
2020
Estimation and identifiability of kinetic parameters in dynamical models of biochemical reaction networks
2019
Bayesian and frequentist computation with application to data from the Medical Birth Registry of Norway
2019
Stochastic data assimilation of observations with a detection limit
2016
Likelihood Estimation of Jump-Diffusions: Extensions from Diffusions to Jump-Diffusions, Implementation with Automatic Differentiation, and Applications
2006
On Curvature and Separability in Unconstrained Optimisation
2000
Towards a statistical model for the uncertainty in fisheries data for stock asssessment in the Barents Sea
1995
Methods for simulation of stochastic vector-fields in NSPACE
1994
Nonparametric functional estimation with application to hypothesis testing
1993
The limit distribution of the Hoeffding statistic for test of serial independence. Report No.22 Jan. 1993
1991
Edgeworth utvikling og bootstrapping i tidsrekke analyse
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