Nachiket Marathe

Publications:

• Radisic, V., Lunestad, B.T., Sanden, M., Bank, M.S. and Marathe, N.P. (2021) Draft Genome Sequence of Multidrug-Resistant Pseudomonas protegens Strain 11HC2, Isolated from Marine Plastic Collected from the West Coast of Norway. Microbiology resource announcements 10(2), e01285-01220.
• Radisic, V., Nimje, P.S., Bienfait, A.M. and Marathe, N.P. (2020) Marine Plastics from Norwegian West Coast Carry Potentially Virulent Fish Pathogens and Opportunistic Human Pathogens Harboring New Variants of Antibiotic Resistance Genes. Microorganisms 8(8), 1200.
• Håkonsholm, F., Hetland, M.A., Svanevik, C.S., Sundsfjord, A., Lunestad, B.T. and Marathe, N.P. (2020) Antibiotic sensitivity screening of Klebsiella spp. and Raoultella spp. isolated from marine bivalve molluscs reveal presence of CTX-M-producing K. pneumoniae. Microorganisms 8(12), 1909. 
• Grevskott, D.H., Salvà-Serra, F., Moore, E.R.B. and Marathe, N.P. (2020) Nanopore sequencing reveals genomic map of CTX-M-type extendedspectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway. BMC Microbiology 20, 134. 
• Böhm, M.-E., Razavi, M., Marathe, N.P., Flach, C.-F. and Larsson, D.J. (2020) Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities. Microbiome 8(1), 1-11. 
• Fröhlich, C., Sørum, V., Huber, S., Samuelsen, O., Berglund, F., Kristiansson, E.,  Kotsakis, S. D., Marathe, N. P., Larsson, D. G. J., & Leiros S., H. K. (2020).  Structural and biochemical characterization of the environmental MBLs MYO-1,  ECV-1 and SHD-1. J Antimicrob Chemother, 75(9), 2554-2563. 
• Marathe NP, Berglund F, Razavi M, Pal C, Dröge J, Samant S, Kristiansson E, Larsson DJ: Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes. Microbiome 2019, 7 (1): 97.
• Berglund F, Österlund T, Boulund F, Marathe NP, Larsson DJ, Kristiansson E: Identification and reconstruction of novel antibiotic resistance genes from metagenomes. Microbiome 2019, 7 (1): 52.
• Walujkar SA, Kumbhare SV, Marathe NP, Patangia DV, Lawate PS, Bharadwaj RS, Shouche YS: Molecular profiling of mucosal tissue associated microbiota in patients manifesting acute exacerbations and remission stage of ulcerative colitis. World Journal of Microbiology and Biotechnology 2018, 34 (6): 76.
• Marathe NP, Janzon A, Kotsakis SD, Flach CF, Razavi M, Berglund F, Kristiansson E, Larsson DJ: Functional metagenomics reveals a novel carbapenem-hydrolyzing mobile beta-lactamase from Indian river sediments contaminated with antibiotic production waste. Environment international 2018, 112: 279-286.
• Jutkina J, Marathe N, Flach CF, Larsson D: Antibiotics and common antibacterial biocides stimulate horizontal transfer of resistance at low concentrations. Science of the Total Environment 2018, 616: 172-178.
• Razavi M, Marathe NP, Gillings MR, Flach CF, Kristiansson E, Larsson DJ: Discovery of the fourth mobile sulfonamide resistance gene. Microbiome 2017, 5 (1): 160.
• Marathe NP, Pal C, Gaikwad SS, Jonsson V, Kristiansson E, Larsson DJ: Untreated urban waste contaminates Indian river sediments with resistance genes to last resort antibiotics. Water research 2017, 124: 388-397.
• Boulund F, Berglund F, Flach CF, Bengtsson-Palme J, Marathe NP, Larsson DJ, Kristiansson E: Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets. BMC Genomics 2017, 18 (1): 682.
• Berglund F, Marathe NP, Österlund T, Bengtsson-Palme J, Kotsakis S, Flach CF, Larsson DJ, Kristiansson E: Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data. Microbiome 2017, 5 (1): 134.
• Paul D, Kumbhare SV, Mhatre SS, Chowdhury SP, Shetty SA, Marathe NP, Bhute S, Shouche YS: Exploration of microbial diversity and community structure of lonar lake: the only hypersaline meteorite crater lake within basalt rock. Frontiers in microbiology 2016, 6: 1553.
• Marathe NP, Shetty SA, Shouche YS, Larsson DJ: Limited bacterial diversity within a treatment plant receiving antibiotic-containing waste from bulk drug production. PloS one 2016, 11 (11): e0165914.
• Marathe NP, Gaikwad SS, Vaishampayan AA, Rasane MH, Shouche YS, Gade WN: Mossambicus tilapia (Oreochromis mossambicus) collected from water bodies impacted by urban waste carries extended-spectrum beta-lactamases and integron-bearing gut bacteria. Journal of Biosciences 2016, 41 (3): 341-346.
• Pandey PK, Verma P, Marathe N, Shetty S, Bavdekar A, Patole MS, Stensvold CR, Shouche YS: Prevalence and subtype analysis of Blastocystis in healthy Indian individuals. Infection, Genetics and Evolution 2015, 31: 296-299.
• Marathe N, Nagarkar S, Vaishampayan A, Rasane M, Samant S, Dohe V, Kagal A, Shouche Y, Deshpande N: High prevalence of class 1 integrons in clinical isolates of methicillin-resistant Staphylococcus aureus from India. Indian journal of medical microbiology 2015, 33 (2): 231.
• Lanjekar VB, Marathe NP, Shouche YS, Ranade DR: Clostridium punense sp. nov., an obligate anaerobic isolated from healthy human faeces. International Journal of Systematic and Evolutionary Microbiology 2015, 65 (12): 4749-4756.
• Johnning A, Kristiansson E, Angelin M, Marathe N, Shouche YS, Johansson A, Larsson DJ: Quinolone resistance mutations in the faecal microbiota of Swedish travelers to India. BMC microbiology 2015, 15 (1): 235.
• Walujkar SA, Dhotre DP, Marathe NP, Lawate PS, Bharadwaj RS, Shouche YS: Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing. Gut Pathogens 2014, 6 (1): 22.
• Rutgersson C, Fick J, Marathe N, Kristiansson E, Janzon A, Angelin M, Johansson A, Shouche Y, Flach CF, Larsson DJ: Fluoroquinolones and qnr genes in sediment, water, soil, and human fecal flora in an environment polluted by manufacturing discharges. Environmental Science & Technology 2014, 48 (14): 7825-7832.
• Marathe NP, Shetty SA, Lanjekar VB, Rasane MH, Ranade DR, Shouche YS: Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity. Good Pathogens 2014, 6 (1): 30.
• Mahale KN, Paranjape PS, Marathe NP, Dhotre DP, Chowdhury S, Shetty SA, Sharma A, Sharma K, Tuteja U, Batra HV: Draft genome sequences of Yersinia pestis strains from the 1994 plague epidemic of Surat and 2002 Shimla outbreak in India . Indian Journal of Microbiology 2014, 54 (4): 480-482.
• Lanjekar V, Marathe N, Ramana VV, Shouche Y, Ranade D: Megasphaera indica sp. nov., an obligate anaerobic bacteria isolated from human faeces. International Journal of Systematic and Evolutionary Microbiology 2014, 64 (7): 2250-2256.
• Shetty SA, Marathe NP, Shouche YS: Initiating exploration of the gut microbiome in Indians. Current Science 2013, 104 (5): 580.
• Shetty SA, Marathe NP, Shouche YS: Opportunities and challenges for gut microbiome studies in the Indian population. Microbiome 2013, 1 (1): 24.
• Shetty SA, Marathe NP, Munot H, Antony CP, Dhotre DP, Murrell JC, Shouche YS: Draft genome sequence of Methylophaga lonarensis MPLT, a haloalkaliphilic (non-methane-utilizing) methylotroph. Genome Announc 2013, 1 (3): e00202-00213.
• Shetty SA, Marathe NP, Lanjekar V, Ranade D, Shouche YS: Comparative genome analysis of Megasphaera sp. reveals niche specialization and its potential role in the human gut. PloS one 2013, 8 (11): e79353.
• Marathe NP, Regina VR, Walujkar SA, Charan SS, Moore ER, Larsson DJ, Shouche YS: A treatment plant receiving waste water from multiple bulk drug manufacturers is a reservoir for highly multi-drug resistant integron-bearing bacteria. PLoS One 2013, 8 (10): e77310.
• Marathe NP, Rasane MH, Kumar H, Patwardhan AA, Shouche YS, Diwanay SS: In vitro antibacterial activity of Tabernaemontana alternifolia (Roxb) stem bark aqueous extracts against clinical isolates of methicillin resistant Staphylococcus aureus. Annals of clinical microbiology and antimicrobials 2013, 12 (1): 26.
• Marathe N, Shetty S, Lanjekar V, Ranade D, Shouche Y: Changes in human gut flora with age: an Indian familial study. BMC microbiology 2012, 12 (1): 222.